PESQUISA VETERINÁRIA BRASILEIRA

Abstract in English:

ABSTRACT.- Ribeiro E.L., Oliveira A.G.G., Laguardia-Nascimento M., Mata C.P.S.M.N., Reis J.K.P. & Fonseca Jr A.A. 2016. [Comparative study and validation of three quantitative PCR (qPCR) techniques for the diagnosis of African Swine Fever.] Estudo comparativo e validação de três técnicas de PCR quantitativa (qPCR) para diagnóstico de Peste Suína Africana. Pesquisa Veterinária Brasileira 36(6):473-478. Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Av. Pres. Antônio Carlos 6627, Pampulha, Belo Horizonte, MG 31270-901, Brazil. E-mail: jenner@ufmg.br This study evaluated the performance of three real time PCR techniques (qPCR) for the diagnosis of African Swine Fever in tissue samples. The three chosen techniques are based on amplification of viral protein VP72 gene sequences and are recommended by OIE (PSA-OIE), the United States official laboratories (PSA-USDA) and the European Union (PSA-EU). Target sequences of the viral DNA were inserted into synthetic plasmid, which served as a positive control for the standardization of techniques and optimization of reagents, determination of limits of detection and performance verification testing. To gauge repeatability and reproducibility of techniques, standard procedures were repeated on different days by two analysts and by changing mix reagents and equipment, and also by another laboratory. Analytical sensitivity tests were done with reference samples provided by an OIE reference laboratory and analytical and diagnostic specificity were tested with negative samples. The PSA-EU and PSA-USDA techniques were more advantageous to use because of lower concentration of oligos used. There were no significant differences in quantitative results varying the days of tests, analysts, equipment and the mix of reagents. The three techniques had high analytical and diagnostic specificity and sensitivity. The three qPCR techniques were considered equivalent and effective and can be adopted by any laboratory for issuing official diagnosis of African Swine Fever.

• African swine fever Peste Suína Africana

Abstract in Portuguese:

RESUMO.- Ribeiro E.L., Oliveira A.G.G., Laguardia-Nascimento M., Mata C.P.S.M.N., Reis J.K.P. & Fonseca Jr A.A. 2016. [Comparative study and validation of three quantitative PCR (qPCR) techniques for the diagnosis of African Swine Fever.] Estudo comparativo e validação de três técnicas de PCR quantitativa (qPCR) para diagnóstico de Peste Suína Africana. Pesquisa Veterinária Brasileira 36(6):473-478. Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Av. Pres. Antônio Carlos 6627, Pampulha, Belo Horizonte, MG 31270-901, Brazil. E-mail: jenner@ufmg.br Este estudo verificou o desempenho de três técnicas de PCR quantitativa (Real-Time) para o diagnóstico de Peste Suína Africana, uma doença exótica no Brasil, a partir de amostras de tecidos. As três técnicas escolhidas baseiam-se na amplificação de sequências do gene da proteína viral VP72 e são preconizadas, cada uma, por laboratórios oficiais da OIE (PSA-OIE), dos Estados Unidos (PSA-USDA) e da União Europeia (PSA-EU), respectivamente. Oligonucleotídeos iniciadores e sondas de hidrólise marcadas com fluoróforos foram sintetizados conforme a literatura de referência consultada. Sequências-alvo do DNA viral foram inseridos em plasmídeo sintético, os quais serviram de controle positivo para a padronização das técnicas e otimização de reagentes, determinação dos limites de detecção e testes de verificação de desempenho. Para aferição de repetibilidade e reprodutibilidade das técnicas, as técnicas padronizadas foram repetidas em dias diferentes, por um segundo analista, com alteração no mix comercial de reagentes utilizado e em um equipamento diferente, e também por outro laboratório. Realizaram-se, ainda, provas de sensibilidade analítica com amostras de DNA viral de referência e especificidade analítica e diagnóstica, com amostras negativas. As técnicas de PSA-EU e PSA-USDA apresentaram-se mais vantajosas quanto ao consumo de iniciadores. Não houve diferenças significativas nos resultados quantitativos variando-se os dias dos ensaios, os analistas, os equipamentos e o mix de reagentes. As três técnicas apresentaram alta especificidade analítica e diagnóstica e sensibilidade diagnóstica. As três técnicas de qPCR mostraram-se eficazes para serem adotadas por um mesmo laboratório para emissão de diagnósticos oficiais de Peste Suína Africana.

Abstract in English:

Tokarnia C.H., Peixoto P.V., Döbereiner J., Barros S.S. & Riet-Correa F. 2004. [The outbreak of African swine fever which ocurred in 1978 in the county of Paracambi, Rio de Janeiro, Brazil.] O surto de peste suína africana ocorrido em 1978 no município de Paracambi, Rio de Janeiro. Pesquisa Veterinária Brasileira 24(4):223-238. Projeto Sanidade Animal Embrapa/UFRRJ, Km 47, Seropédica, RJ 23890-000, Brazil. E-mail: tokarnia@ufrrj.br Due to doubts which still persist 25 years after the outbreak of African swine fever (ASF) which ocurred in the county of Paracambi, Rio de Janeiro, Brazil, in 1978, the results obtained through the studies to establish and confirm the diagnosis are presented. These include data on the epidemiology, clinic-pathological aspects, bacteriological, virological and ultramicroscopic examinations, the experimental reproduction of the disease and cross immunity tests with classical swine fever virus performed in Brazil, and on the confirmation with isolation of the virus and determination of its identity at the Plum Island Animal Disease Center, New York, USA. The pigs of the affected herd had been fed untreated remains of meals from airplanes of international lines flying to Brazil from Portugal and Spain where ASF was occurring at the time. According to publication by the Ministry of Agriculture, after the diagnosis of the outbreak of ASF described in this paper, 223 additional outbreaks were reported in Brazil between 1978 and 1979, in all the Brazilian regions (North, Northeast, Central-West, Southeast and South). Further outbreaks were reported in 1981, but their number is not known. The last case was reported to have occurred on November 15, 1981, and on December 5, 1984, Brazil was declared free of ASF. For the diagnosis of ASF 54,002 samples were examined by the Department of Virology of the Institute of Microbiology, Federal University of Rio de Janeiro, from 1978 to 1981, by the techniques of haemadsorption in leucocyte cultures (HAd), direct immunoflorescence in tissue sections (FATS), direct immunoflorescence in cell cultures (FATCC), immuno-electro-osmophoresis (IEOP) and indirect immunoflorescence assay (IIF). Only 4 samples were positive with the FATCC procedure. This is the only technique which includes virus isolation; the origin of these positive samples was not reported, but probably they were from the Paracambi outbreak. From other suspected outbreaks of ASF in Brazil there is no information on the isolation and characterization of the virus isolates. Likewise there is no information available about the epidemiology, clinical signs, and pathology of suspected ASF in other outbreaks. The analysis of all published data on this matter in Brazil, the possibility of false-positive results, the lack of information about isolation and characterization of the virus, as well as the lack of epidemiological, clinical and pathological data of these other supposed outbreaks of ASF strongly suggest that the outbreak of Paracambi was the only occurrence of ASF in Brazil, confirmed by the isolation, identification of the virus, and the determination of its pathogenicity, and that ASF occurred and maintained itself confined to this area probably due to the early diagnosis and the rapid application of efficient control measures by the Brazilian authorities; the slaughter of the animals in the outbreak of Paracambi started as soon as 10 days after the first death, 3 days after the presumptive diagnosis.

• African swine fever Brazil pathology experimental reproduction.

Abstract in Portuguese:

Tokarnia C.H., Peixoto P.V., Döbereiner J., Barros S.S. & Riet-Correa F. 2004. [The outbreak of African swine fever which ocurred in 1978 in the county of Paracambi, Rio de Janeiro, Brazil.] O surto de peste suína africana ocorrido em 1978 no município de Paracambi, Rio de Janeiro. Pesquisa Veterinária Brasileira 24(4):223-238. Projeto Sanidade Animal Embrapa/UFRRJ, Km 47, Seropédica, RJ 23890-000, Brazil. E-mail: tokarnia@ufrrj.br Due to doubts which still persist 25 years after the outbreak of African swine fever (ASF) which ocurred in the county of Paracambi, Rio de Janeiro, Brazil, in 1978, the results obtained through the studies to establish and confirm the diagnosis are presented. These include data on the epidemiology, clinic-pathological aspects, bacteriological, virological and ultramicroscopic examinations, the experimental reproduction of the disease and cross immunity tests with classical swine fever virus performed in Brazil, and on the confirmation with isolation of the virus and determination of its identity at the Plum Island Animal Disease Center, New York, USA. The pigs of the affected herd had been fed untreated remains of meals from airplanes of international lines flying to Brazil from Portugal and Spain where ASF was occurring at the time. According to publication by the Ministry of Agriculture, after the diagnosis of the outbreak of ASF described in this paper, 223 additional outbreaks were reported in Brazil between 1978 and 1979, in all the Brazilian regions (North, Northeast, Central-West, Southeast and South). Further outbreaks were reported in 1981, but their number is not known. The last case was reported to have occurred on November 15, 1981, and on December 5, 1984, Brazil was declared free of ASF. For the diagnosis of ASF 54,002 samples were examined by the Department of Virology of the Institute of Microbiology, Federal University of Rio de Janeiro, from 1978 to 1981, by the techniques of haemadsorption in leucocyte cultures (HAd), direct immunoflorescence in tissue sections (FATS), direct immunoflorescence in cell cultures (FATCC), immuno-electro-osmophoresis (IEOP) and indirect immunoflorescence assay (IIF). Only 4 samples were positive with the FATCC procedure. This is the only technique which includes virus isolation; the origin of these positive samples was not reported, but probably they were from the Paracambi outbreak. From other suspected outbreaks of ASF in Brazil there is no information on the isolation and characterization of the virus isolates. Likewise there is no information available about the epidemiology, clinical signs, and pathology of suspected ASF in other outbreaks. The analysis of all published data on this matter in Brazil, the possibility of false-positive results, the lack of information about isolation and characterization of the virus, as well as the lack of epidemiological, clinical and pathological data of these other supposed outbreaks of ASF strongly suggest that the outbreak of Paracambi was the only occurrence of ASF in Brazil, confirmed by the isolation, identification of the virus, and the determination of its pathogenicity, and that ASF occurred and maintained itself confined to this area probably due to the early diagnosis and the rapid application of efficient control measures by the Brazilian authorities; the slaughter of the animals in the outbreak of Paracambi started as soon as 10 days after the first death, 3 days after the presumptive diagnosis.